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  • I do believe that their parallel processing (Bahram Kermani once told me several years ago how they can remarkably scale their whole-genome alignment as a square of their processors, an incredible feat IMHO) could be modified to accommodate other types of reads ??? anything would be easier than their (10bp + 10bp + 10bp + 5bp) x2 reads, with variable gaps between them, and an insert of several 100
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