| http://www.w3.org/ns/prov#value | - Unlike the competitive methods based only on covariance information, the averaged base-pairing probabilities described in the first term of Equation (10) play an important role in keeping the quality of prediction when the alignment quality gets worse.IPknot has several parameters that users should select, including the weights for true positive base pairs at the level p (??(p) in Equation (3)), t
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